[Gvsig_english] gvSIG and Java on Mac OS X

Anna Hodgkinson anna.hodgkinson at thehumanjourney.net
Thu Oct 23 17:26:38 CEST 2008


----- Original Message -----
From: "Agustin Diez Castillo" <Agustin.Diez at uv.es>
To: "Benjamin Ducke" <benjamin.ducke at oxfordarch.co.uk>, "Users and Developers mailing list" <gvsig_internacional at runas.cap.gva.es>
Sent: 23 October 2008 16:07:01 o'clock (GMT) Europe/London
Subject: Re: [Gvsig_english] gvSIG and Java on Mac OS X

Ben,
In Leopard the terminal launches X11 apps (i.e. grass). To see hide folders

sudo defaults write com.apple.finder AppleShowAllFiles TRUE
# and restart finder or
killall finder
# to hide again
defaults write com.apple.finder AppleShowAllFiles FALSE
# and restart finder or
killall finder
There are some apps to do it, but those commands should work. It's also a good idea to
check the X11 defaults
# script to launch X11
if [ -d "/Applications/Utilities/X11.app" ] ; then
        open /Applications/Utilities/X11.app
fi

# xterm - make sure X11 is in PATH
pathX11=`echo "$PATH" | grep '/usr/X11R6/bin'`
if [ ! "$pathX11" ] ; then
        PATH="$PATH:/usr/X11R6/bin"
fi
export PATH



> OK, one small step closer: if I associate the .sh shell script with X11,
> then at least I can start it from the Finder by double-clicking.
> 
> Plus, double-clicking the .app package now at least does something (the
> little icon goes bouncy-bouncy in the Dock), but after a few seconds
> it just bails out silently.
> 
> Anyhow, neither X11 nor the Terminal are needed for the startup script
> to work, just the "sh" interpreter in /usr/bin. However, the Finder
> cannot see that directory.
> 
> How difficult can it be?
> 
> Ben
> 
> Agustin Diez Castillo wrote:
> > You have an example at
> > .../Developer/Examples/Automator/Sort\ Items/main.command
> > or try mine.
> > 
> > 
> > El Oct 23, 2008, a las 1:57 PM, Benjamin Ducke escribió:
> > 
> >> No luck with the .command wrapper, unforunately.
> >> Double-clicking it just opens it in my system's default text editor
> >> (even though it has a command icon and I set the executable bits).
> >>
> >> Ben
> >>
> >> Agustin Diez Castillo wrote:
> >>> El Oct 23, 2008, a las 1:31 PM, Benjamin Ducke escribió:
> >>>> OK, I ran some tests using SEXTANTE 0.53 and different Java
> >>>> virtual machines (1.5 and 1.6). I got the results I expected
> >>>> and they were the same for all JRE versions.
> >>>>
> >>>> So, I am switching back to SEXTANTE 0.53 for good now!
> >>>>
> >>>> I am getting very close to releasing a new, fully self-contained
> >>>> Mac version with a customized installer now. There is only one
> >>>> remaining problem that keeps frustrating me:
> >>>>
> >>>> I can't seem to figure out how to set up a simple Info.plist
> >>>> in the package so it will start my shell script. All works fine
> >>>> from the command line. But there seems to be now way Mac OS X
> >>>> accepts a shell script in the package's "MacOS" folder as an
> >>>> executable. It simply won't start. Did I miss something?
> >>>> Is it necessary to install some helper application on Mac OS X
> >>>> to launch a shell script from the desktop or out of a .app package?
> >>> I hope Mija is reading that, but in the meanwhile what I do is to 
> >>> make a *.command file [1] for the script, this will reveal the file 
> >>> allowing me and others to double click it to launch the script, but 
> >>> automator can do the trick as well.
> >>>>
> >>>>
> >>>> Ben
> >>>>
> >>>>
> >>>>
> >>>> Agustin Diez Castillo wrote:
> >>>>> Ben,
> >>>>> I was on the field. I have checked then with several commands. 
> >>>>> Example nearest neighbour:
> >>>>> # your bundle:
> >>>>> Vecino más cercano
> >>>>> Distancia media:0
> >>>>> Distancia esperada:7,009
> >>>>> Distancia esperada corregida con efecto borde:7,068
> >>>>> Varianza:0,005
> >>>>> Varianza corregida con efecto borde:0,006
> >>>>> Índice de vecino mas próximo:0
> >>>>> Índice de vecino mas próximo corregido:0
> >>>>> Valor Z:-94,576
> >>>>> Valor Z corregido:-92,075
> >>>>> # The same shape with sextante 0.53
> >>>>>   *
> >>>>>         o          Distancia media:0,911
> >>>>>         o Distancia esperada:7,009
> >>>>>         o Distancia esperada corregida con efecto borde:7,068
> >>>>>         o Varianza:0,005
> >>>>>         o Varianza corregida con efecto borde:0,006
> >>>>>         o Índice de vecino mas próximo:0,13
> >>>>>         o Índice de vecino mas próximo corregido:0,129
> >>>>>         o Valor Z:-82,278
> >>>>>         o Valor Z corregido:-80,202       It's obvious that yours 
> >>>>> (maybe when running in a Spanish locale) lost the decimals. I have 
> >>>>> checked it with several set of points and it happens consistently 
> >>>>> HOWEVER quadrant analysis produces the very same results. May first 
> >>>>> guess was that maybe there was some problem with big set of points 
> >>>>> but the same happens with smaller sets (see the last example)
> >>>>> ------------------------------------------------------------------------ 
> >>>>>
> >>>>> #Yours
> >>>>> Análisis por cuadrantes
> >>>>> Media1,996732
> >>>>> Varianza =39,511427
> >>>>> Coeficiente de variación [~0 = uniforme, ~1 = aleatorio, >1 = 
> >>>>> agregado] =19,788047
> >>>>> Valor D del Test de Kolmogorov-Smirnov =0,731052
> >>>>> Valor crítico al 5% =0,038873
> >>>>> #sextante 0.53
> >>>>>        nálisis por cuadrantes
> >>>>>   * Media1,996732
> >>>>>   * Varianza =39,511427
> >>>>>   * Coeficiente de variación [~0 = uniforme, ~1 = aleatorio, >1 =
> >>>>>     agregado] =19,788047
> >>>>>   * Valor D del Test de Kolmogorov-Smirnov =0,731052
> >>>>>   * Valor crítico al 5% =0,038873           *
> >>>>> With the attached set:
> >>>>> Vecino más cercano
> >>>>> Distancia media:0
> >>>>> Distancia esperada:2,482
> >>>>> Distancia esperada corregida con efecto borde:2,56
> >>>>> Varianza:0,009
> >>>>> Varianza corregida con efecto borde:0,01
> >>>>> Índice de vecino mas próximo:0
> >>>>> Índice de vecino mas próximo corregido:0
> >>>>> Valor Z:-26,577
> >>>>> Valor Z corregido:-25,166
> >>>>>          Vecino más cercano
> >>>>>   * Distancia media:2,239
> >>>>>   * Distancia esperada:2,482
> >>>>>   * Distancia esperada corregida con efecto borde:2,56
> >>>>>   * Varianza:0,009
> >>>>>   * Varianza corregida con efecto borde:0,01
> >>>>>   * Índice de vecino mas próximo:0,902
> >>>>>   * Índice de vecino mas próximo corregido:0,875
> >>>>>   * Valor Z:-2,593
> >>>>>   * Valor Z corregido:-3,154       El Oct 20, 2008, a las 7:45 PM, 
> >>>>> Benjamin Ducke escribió:
> >>>>>> Agustin,
> >>>>>>
> >>>>>> which command exactly was it and what parameter settings
> >>>>>> did you use?
> >>>>>>
> >>>>>> If you can send me the original input data, I can try to
> >>>>>> reproduce this with different SEXTANTE versions on Windows
> >>>>>> and Linux. This way, we might find out where the problem
> >>>>>> originates.
> >>>>>>
> >>>>>> You are saying "Intel works, but not PPC". Does that mean
> >>>>>> you get consistently the same results on an Intel CPU
> >>>>>> but not a PPC? If so, there might be a problem with the
> >>>>>> different floating point representations.
> >>>>>>
> >>>>>> Ben
> >>>>>>
> >>>>>> ----- Original Message -----
> >>>>>> From: "Agustin Diez Castillo" <Agustin.Diez at uv.es 
> >>>>>> <mailto:Agustin.Diez at uv.es>>
> >>>>>> To: "Users and Developers mailing list" 
> >>>>>> <gvsig_internacional at runas.cap.gva.es <mailto:gvsig_internacional at runas.cap.gva.es>> 
> >>>>>>
> >>>>>> Sent: Monday, October 20, 2008 2:12:45 PM (GMT) Europe/London
> >>>>>> Subject: Re: [Gvsig_english] gvSIG and Java on Mac OS X
> >>>>>>
> >>>>>> Ben,
> >>>>>> Neither do I. I will double check and report to victor. It's true 
> >>>>>> that  I'm using a different version (former 0.53v).
> >>>>>> Anyhow,
> >>>>>> I got very different results with exactly the same command, not 
> >>>>>> even  the number of valid cells is the same, weird.
> >>>>>> It's working on 32 bit intel but not in ppcs.
> >>>>>> Agustin
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> ------
> >>>>>> Files attached to this email may be in ISO 26300 format (OASIS 
> >>>>>> Open Document Format). If you have difficulty opening them, please 
> >>>>>> visit http://iso26300.info for more information.
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> Gvsig_internacional mailing list
> >>>>>> Gvsig_internacional at runas.cap.gva.es 
> >>>>>> <mailto:Gvsig_internacional at runas.cap.gva.es>
> >>>>>> http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> >>>>>>
> >>>>> ------------------------------------------------------------------------ 
> >>>>>
> >>>>> _______________________________________________
> >>>>> Gvsig_internacional mailing list
> >>>>> Gvsig_internacional at runas.cap.gva.es
> >>>>> http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> >>>>
> >>>>
> >>>> -- 
> >>>> Benjamin Ducke
> >>>> Senior Applications Support and Development Officer
> >>>>
> >>>> Oxford Archaeology Ltd
> >>>> Janus House
> >>>> Osney Mead
> >>>> OX2 0ES
> >>>> Oxford, U.K.
> >>>>
> >>>> Tel: +44 (0)1865 263 800 (switchboard)
> >>>> Tel: +44 (0)1865 980 758 (direct)
> >>>> Fax :+44 (0)1865 793 496
> >>>> benjamin.ducke at oxfordarch.co.uk
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> ------
> >>>> Files attached to this email may be in ISO 26300 format (OASIS Open 
> >>>> Document Format). If you have difficulty opening them, please visit 
> >>>> http://iso26300.info for more information.
> >>>>
> >>>> _______________________________________________
> >>>> Gvsig_internacional mailing list
> >>>> Gvsig_internacional at runas.cap.gva.es
> >>>> http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> >>>>
> >>> [1] 
> >>>
http://books.google.es/books?id=cQUnrIAaETIC&pg=PA517&lpg=PA517&dq=%22.command+file%22+macos+double+click&source=bl&ots=V98Iop8FU6&sig=1B6NzVF-1zPOd-3WLa_z9eKdCo8&hl=en&sa=X&oi=book_result&resnum=5&ct=result
_______________________________________________ 
> >>>
> >>> Gvsig_internacional mailing list
> >>> Gvsig_internacional at runas.cap.gva.es
> >>> http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> >>
> >>
> >> -- 
> >> Benjamin Ducke
> >> Senior Applications Support and Development Officer
> >>
> >> Oxford Archaeology Ltd
> >> Janus House
> >> Osney Mead
> >> OX2 0ES
> >> Oxford, U.K.
> >>
> >> Tel: +44 (0)1865 263 800 (switchboard)
> >> Tel: +44 (0)1865 980 758 (direct)
> >> Fax :+44 (0)1865 793 496
> >> benjamin.ducke at oxfordarch.co.uk
> >>
> >>
> >>
> >>
> >> ------
> >> Files attached to this email may be in ISO 26300 format (OASIS Open 
> >> Document Format). If you have difficulty opening them, please visit 
> >> http://iso26300.info for more information.
> >>
> >> _______________________________________________
> >> Gvsig_internacional mailing list
> >> Gvsig_internacional at runas.cap.gva.es
> >> http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> >>
> > 
> > 
> > ------------------------------------------------------------------------
> > 
> > _______________________________________________
> > Gvsig_internacional mailing list
> > Gvsig_internacional at runas.cap.gva.es
> > http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> 
> 
> -- 
> Benjamin Ducke
> Senior Applications Support and Development Officer
> 
> Oxford Archaeology Ltd
> Janus House
> Osney Mead
> OX2 0ES
> Oxford, U.K.
> 
> Tel: +44 (0)1865 263 800 (switchboard)
> Tel: +44 (0)1865 980 758 (direct)
> Fax :+44 (0)1865 793 496
> benjamin.ducke at oxfordarch.co.uk
> 
> 
> 
> 
> ------
> Files attached to this email may be in ISO 26300 format (OASIS Open Document Format). If
you have difficulty opening them, please visit http://iso26300.info for more information.
> 
> _______________________________________________
> Gvsig_internacional mailing list
> Gvsig_internacional at runas.cap.gva.es
> http://runas.cap.gva.es/mailman/listinfo/gvsig_internacional
> 
> 


--
******************************************************
Dr. Agustín Diez Castillo
Departament de Prehistòria i Arqueologia
Phone:   +34 963 86 42 42
Avda. Blasco Ibañez, 28   Fax:      +34 963 86 42 34
València 46010
******************************************************




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-- 
Anna Kathrin Hodgkinson
Geomatics Supervisor

Oxford Archaeology: Exploring the Human Journey
Direct: +44 (0)1865 980855
Switchboard: +44 (0)1865 263 800
http://thehumanjourney.net



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